NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1001469

Scaffold Ga0247723_1001469


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1001469 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13755
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (29.17%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011226Metagenome / Metatranscriptome293Y
F011227Metagenome / Metatranscriptome293Y
F034850Metagenome173Y
F041184Metagenome / Metatranscriptome160N
F043829Metagenome155Y
F047481Metagenome / Metatranscriptome149Y
F091307Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100146910F047481N/AMDSKSIGMCAATILIKVWADIALSEVGVVVAILAGLSTIVYNVYRMYKEIKA
Ga0247723_100146915F034850GGAMEDDLILGEGEEVEEIVEEVGYTYPEYISASVEVLTMLETSNPMTREEVEKMQELKKLCLEMLEYSVKSMHGMLFINDI
Ga0247723_100146916F043829N/AMPQMPLPKWTDLNTFERHKLLGELIDAMIYSGEAVQHLKVTVEQFRLMGYVRSVILPQNEEQ
Ga0247723_100146918F091307N/AMKKQVTTNVRIPAEWLKVSIADIMIMVTATINDTDDIVDVCVREIVIPGYHCINILPQFHSAFYELVEQKCMDAYTFKMDSEYDHQYYSDYVL
Ga0247723_10014694F041184N/AMASDFRPGKLDIQIWRNDTWQQVFTLLADTTPVNLSGATVYIQVRKGCGGVLALSLTNGSGVTIGGVSNNQITVNKLVDIAKGNYVWDMQVTFTDLTVKTYLEGDFIVYDDVTKP
Ga0247723_10014698F011226N/AMAKQISPVTIWTNGTSKVAEYLQVTGINDNYESSATNYWQLFTKVTTDGVDSQGEQVAQGNLTISGQDYINWGDQPAMAINEWIYQWSADQLNLVILP
Ga0247723_10014699F011227N/AMNLVELKAQAYDILAQIEYLQKQLQETNAKIGEELQKDKNENG
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