NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1002955

Scaffold Ga0247723_1002955


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1002955 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8715
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002502Metagenome / Metatranscriptome553Y
F007525Metagenome / Metatranscriptome349Y
F008496Metagenome / Metatranscriptome332Y
F081267Metagenome114N

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100295510F081267AGGAMSYQYHWVVVYDEDWGAFMVDVETTIMNMAEHPGLVYNKTTGRWEDDLEEGSELEAEYNRLEEILAYQLTRLDIPKKTV
Ga0247723_100295517F008496N/AMEEQVELTPAYDPKATILVRKGYYYGTPSDSRFELENADDISRTYWRVDALQSTNSSNSRAQDKLKEYLVENYDEIGEEHATEIANIFGIDLSKTVDVEFSVTIKATISVPMNTDVSDLSVYDFDVEISSSEYEIEEFDADIDSIDEQY
Ga0247723_100295522F002502GAGMETKIQTPTVGSQFTTAKSGVTGTVQEVIKNQTGSLRIRLDVNGQDRWTTVK
Ga0247723_10029559F007525N/AMGMNLEGVTVEYTQTIPTSKQMPEFYVWQEGYESYATITYLDRVVEVERGGEMSLTLPNLVNGELSDEGVTIVRYSDDLEEAGINDDIQLMQFIKTISNSGFEVYRMNPWWEVFAHNEDMGEVYDTFYDAVDAGIDHILDDRNW
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