NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1003432

Scaffold Ga0247723_1003432


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1003432 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7916
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (85.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000166Metagenome / Metatranscriptome1810Y
F001097Metagenome / Metatranscriptome780Y
F001713Metagenome648Y
F002487Metagenome / Metatranscriptome554Y

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100343211F002487N/AMTRQDAIKDLSHGEYCCYCTEQKTYGSCCGENHFVPFEDLYEEDKEAMIEEYLSKGK
Ga0247723_100343219F000166AGGMPNIPTPEHAELFALSVRKWQQVLSLGDWRIEKGSKPAKQAMASVEFTPNARLAVYRLGDFGAEKITPESLDRTALHELLHIFLHDLMVVSQDPKSSQDEIEMQEHRVINLLENLLFRNSNGGC
Ga0247723_10034324F001713AGGAMKYEFDTTTGEGSVIVTVVMEYEQDEEGTYNENIDEVWFEGRNVMGIFTDKQFQELEIEGCMRLSKHILEEADHAKIIAYEND
Ga0247723_10034327F001097GGAGMNFKWPINDSSRIKPLQGLRSERMDTQVQQKEIDDWLKQSVALVAGCVRGLGTNQRKVRYFAFEGQNDEVTK
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