NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1005624

Scaffold Ga0247723_1005624


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1005624 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5615
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (90.00%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Associated Families8

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009331Metagenome / Metatranscriptome319Y
F011484Metagenome290Y
F016642Metagenome245N
F017972Metagenome237Y
F023834Metagenome208Y
F026864Metagenome196Y
F055450Metagenome / Metatranscriptome138Y
F059896Metagenome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100562410F023834GAGGMSEPTVEYWRAKAELCRDLALAQIIDGDEKMEKEAGMNLMRMTYALSMVDAFNEGGSDDN
Ga0247723_100562413F055450GGAGGMEAENKRLRGAANQAVRQRNYRRARDRALVRLAHLYPDTYKQLLEMEKKTDEQEGKTWLDLSGNTVPVVGVRIRTADGRGAPVLKENIHRSTDEGNDRGEA
Ga0247723_100562414F017972AGGAGVRTRHLQLVTHEHSVTIKTRSDVSSPYGPVNPASTTLLAQETLRANQEARLTELLNSLESVVDNLNYKSFTVYDTLNTAMENLRVALSNIATEEDGTDTL
Ga0247723_100562419F009331AGGMICNNCMDAGVENSVAEYKRATKYHNKCNDKGCVCQHKTGPGYVKREGSKVPLMQTQSP
Ga0247723_10056242F059896AGGCGGMDKCDKCENMARITVSGYIVARYLCAKHAGELCLSVGDIAGRDKFLALEEGDRVA
Ga0247723_100562420F016642N/ACTLLATERWLAKYGSVDRPNYAEGKKNGYLEHELLANVRANVSEWAVASLTDTSWNVPWYPNELHPRRAKLPDVGNNFEVRTVRTRDSIPFWNKDNGKIIVGTKIIDEDYYSEVEVYGWCNPEEYAKAQYRDEAIGGWRVPVTELKGF
Ga0247723_10056246F011484AGGAGMRELEQFLNVEAEWVLERLSTSTEANDRNYYQGRIDQLAQVRRLLNHPQILREEKTA
Ga0247723_10056248F026864GGAGMNEQEKTAQFVFTVVVIPDNKRYEVELWDFAGTEPKQLSTGGGSNWRTALGEALSKIELPTEKVEKTINDVIKEGVEDEGV
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