NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1005809

Scaffold Ga0247723_1005809


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1005809 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5493
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (8.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009264Metagenome / Metatranscriptome320N
F009402Metagenome318Y
F038093Metagenome / Metatranscriptome166N

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100580910F038093N/AMDKIKINFLILRYGAIFHTIFVFPILYMADIYANTPMFWVFLLNHIMFGYFILVQGCALGIKQTINIIAHQDATKAREEDTNKNN
Ga0247723_100580911F009402N/AMKKLDKEFESAGFKYKQTHREDMFAIYERKYINSTKDSHYESIKIQSHNGMEIAGNKIPPSEYYPSSNSWGRHGYTCITKKEAYTRLDKMMKEDVINKEAANKKAERKNAK
Ga0247723_10058094F009264N/AMRAYLEFSLMDDEVDHLTKIGFGAKILDAYEMENGFVAVVVDWNSKTDSHKLKYASQGCITYSSDKIVGVDLEFRNYPYKDDDCEMYPIIWVKLDYNNSNKKMDYVCFQNLKYQAVVYFAPYDWNTTRNSKKIKF
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