NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1006208

Scaffold Ga0247723_1006208


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1006208 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5254
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (93.75%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F066470Metagenome126Y
F073256Metagenome120Y
F075715Metagenome118N

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100620810F075715GAGGMNKEYLAAKAELCSNLAQEQMVNGEGEEAVKNLKRMIRALEEINLINYLEERRGR
Ga0247723_100620812F066470GGAGGMTEIARRIETAKRSAVGQRNYRRARDRAMTRLATAYPETYKELLEQEKIVDEQMGKKWIDIDGSTSQPMDLDASTSPTGGRESEQASTGPDQGNDGGEA
Ga0247723_10062087F073256GAGGMQLQEIDTIQDLKDWVEENMPGARLTEDSAGDIVIHTGLHSTMGGYLHEREGK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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