NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1006375

Scaffold Ga0247723_1006375


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1006375 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5168
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (58.82%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005563Metagenome / Metatranscriptome396Y
F043282Metagenome / Metatranscriptome156Y
F095137Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100637512F005563N/AMIDYPTALVEMHRGNVVKYIGTVNGNVMTNNGASFCMCRGCIFRYDKEIKWNKLGYMVYDPDFRYELTGETVDPRAWKPEKKTDRRDIKSKLGYSRIGLGNV
Ga0247723_100637514F095137N/AMPTKRIRTYPEKNCPTCGKLFAKQGKYCCRACGNSRVFTATYKAKVSNALKQKMIDDPEYKQKIVSQIMPDIPIPPQIESPMGLDQFVSDGDLWTEV
Ga0247723_100637515F043282AGGAMMKVNTGDTIRGYDFKPMVGREDCFVEGVVLGINSKMGYNAYEIEVTKDSWSDAECKGRVGKIVFVPVEVAFMDYAGRVINLSRI
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