NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1008055

Scaffold Ga0247723_1008055


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1008055 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4399
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009265Metagenome / Metatranscriptome320Y
F009526Metagenome / Metatranscriptome316N
F009679Metagenome / Metatranscriptome314Y
F009746Metagenome / Metatranscriptome313N
F029096Metagenome189Y

Sequences

Protein IDFamilyRBSSequence
Ga0247723_10080552F009679AGGAMALITLSELKAVLQIGDIYADSIVQAVADSAENIILSYLIFDDVAIKGVSLTNNVARFYCYNNTFVVGQALTVTGCGSPFNGSRTVTKIGYDEFDTQYFEAAITNADIVKTPLIPSGRAVLTSQAALYDTTPEVREAALAVACDIWITRTGTLGQQGVDFQSPAPYRLGRSMLTRVSGLLGKHLDTRGYIG
Ga0247723_10080553F009746GAGGLADLATYRANLASTLAAAGRVVYAWPNENITPPAIVIVPGSPYITVSAIGGARCNVRFDITVIVNAADNQAALANIEALIFSVTDLLSNNISFLNGWSQPTVQQIGNADMLISQLSIEMVTTN
Ga0247723_10080554F009526AGGMPATYITGRSLTLTINSVSYADQASSVTLEMENNQQVLEVLSGRAYKTVDKTATLNVELYLDDTSSAGIISALWDAAKNSPDTSLAFSFDVNGDTFTGNVFPVFPTVGGAATDVLSTSLSFVVEDGSVARA
Ga0247723_10080555F009265AGGVSDESTWLWIEIERDLGYTVTQAAEKMGQGSLDVITCMLYKASKAAGHTKMPNQQAWVTNEFEGFEVVEESPKES
Ga0247723_10080556F029096GAGMGMAETRTSITVRPDLKDYRGLLKALNQMDKESQFVLKDEVYSISAWTAQGIKQAGFAHPFYPKQAAVVAATVRPARDRVPTVYVGGTKGRASGGANAGQLLFGNEFGGDRNAFGNRSAFKNGGYRFPPRTAREGRGNTGYWIFPTLKAMQPEIKKRWFAACSKVMDNWARNS
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