NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0247723_1008746

Scaffold Ga0247723_1008746


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1008746 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4137
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (91.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013279Metagenome / Metatranscriptome272Y
F014590Metagenome261Y
F023834Metagenome208Y
F026864Metagenome196Y
F055450Metagenome / Metatranscriptome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100874610F026864GGAGMSEQDKTAQFVFTVVIAPDNKQYDVELWDFAGTEPKQLSTGQATNWRTALGEALSKIELPTDKVEKTINDVIKEEEEGKGQ
Ga0247723_10087464F013279AGGAGMMYDYNCPECKAELTVERSIHEEPREPSCFECHIPMIRKWASPSITFKGKGFYSTGG
Ga0247723_10087465F014590GGAGGVRTRHLQLVTHEHSVTIKTRSDVLSPYGPVRAGLTTSQTTHEVRLTELLNSLESVVDSLNYKSFTVYDTLNTAMENLRVALSNIATEEDGTDTL
Ga0247723_10087466F055450GGAGGMEAENKRLRGAANQAVRQRNYRRARDRALVRLAHLYPDTYKQLLEMEKKTDEQEGKTWLDLSGNTVPVVGVRIRTADGRGAPVLKEDIHRSTDEGDNGGEA
Ga0247723_10087468F023834AGAAGGMSEPTVDYWRAKAELCRDLALIQIEDEATEKEAGMNLMRMVHALSMVDAFNEGGSDDN
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.