NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1013093

Scaffold Ga0247723_1013093


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1013093 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3089
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020910Metagenome / Metatranscriptome221Y
F021288Metagenome / Metatranscriptome219Y
F080058Metagenome / Metatranscriptome115N

Sequences

Protein IDFamilyRBSSequence
Ga0247723_10130932F080058GGAGVNEYKIELIHEPSGAYMNFVMFSETKEDEVALAKEIWADMSVVVLDCIEEEE
Ga0247723_10130938F020910GAGGMWSRYTFVCDPDECDALVEFTVRDDFGFPLGVVQMKCPCGRFLNYISYEEANAPIITDVSKVTPREVVKINTNPYN
Ga0247723_10130939F021288GAGGMLGYTQRDLADMTYGVYSADLLINADENPAIHNYLVKAGEFLDGLWAEGYFDNVE
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Institute for Fundamental Biomedical Research
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