NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1014990

Scaffold Ga0247723_1014990


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1014990 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2800
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001923Metagenome / Metatranscriptome617Y
F003583Metagenome / Metatranscriptome478Y
F014261Metagenome264Y

Sequences

Protein IDFamilyRBSSequence
Ga0247723_10149902F001923N/AVSAPIDPESIPKELKDGVVASVLGGLAMTARLLLSTEPVSLGWVVRRVLAAAITAALVGYGIQDHIESPGLRMAVVGAAGYAAPECLDYLMRYIKARGEKEVGAITGKPNGKKKAPAKGKRKR
Ga0247723_10149903F003583N/AMAKRKPQPKESGSGNLLLAVTLLTAFAGVAAFASAFIAGYVLDTLQSRDALVMIVTDAGIKSDSVSVEQGLSSATMALKSVRDLAWALAVGCLGVGVAVFLRSRRQTA
Ga0247723_10149905F014261N/AMKTLLAIIILGWTAAVTFCGPELYRAINGPEPVKAKAKVTNRSAR
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