NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1024709

Scaffold Ga0247723_1024709


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1024709 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1969
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028148Metagenome192Y
F074789Metagenome119Y
F086618Metagenome110N

Sequences

Protein IDFamilyRBSSequence
Ga0247723_10247093F028148N/AMKTIHQVIHEIQCFDPAVRAFDAHDLPQSVRAYLHNKYSMDARLTDEEQQLIETSFEPFADNLREAFQDDPRPDATRFYLFDDLSLYVKTNAGPELWADAQVFVVERILPQMRLTRLEADLMREIGMDDQVNEVRDDFYSAFAHILHRDCGIPHCDAREHWNAFSRQLSDSACESIVLGGSESGRAEGLRFASEYTINT
Ga0247723_10247094F074789N/AMQTTIETFRALESDGLVRLRALPETESYFDVYGEPDSPEERQEIIDQIDRDGCWCVVSEFYADGAWHHADSVGMCVYARPLDPAENCYVEDLMRAAIDALEMQSTEGALI
Ga0247723_10247095F086618N/AMASIQRIETAVSNLINGNLTHARKAARGLTYSDIFDWLTGPVGWPENRSRACADYLIGRIDFRTYCISTNR
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