NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1024915

Scaffold Ga0247723_1024915


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1024915 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1959
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004761Metagenome / Metatranscriptome424Y
F032258Metagenome / Metatranscriptome180Y

Sequences

Protein IDFamilyRBSSequence
Ga0247723_10249152F004761GGCGGMSISLNTLRSQVRTMADLDEVDLPDTIVDQFAREGFQRIYALERRWPYLQETYTFNTVVGQREYTISTIGDIREIISVLDTSSSGARLTLIPYDNAEEIWLGNTDVPSRPYFYSFWDKKLQLWAKPDAVYPMTVRAFRNPVYTWLSNADETIDLDEWFHALLPYFVLGRVYQRQEDAQLSQMYLNSFEQGVGLARRDLMKASSAQPVIMSAGRQYPTMRRWLQTLGATLGQ
Ga0247723_10249153F032258N/AMKNAVPAHSYYGQPVSGIRLAPTAGAKIAAPSAPYIGRNRCIANEDTCEGPKARGTDYCIGHLRSQGRAK
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