NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1041557

Scaffold Ga0247723_1041557


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1041557 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1365
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008991Metagenome / Metatranscriptome324N
F015440Metagenome / Metatranscriptome254N
F017436Metagenome / Metatranscriptome240N

Sequences

Protein IDFamilyRBSSequence
Ga0247723_10415571F015440N/AMEGISENERNFQLFKAGLSMVSCLTGEAIRVLEANLKGLQGLFFGLGQWGVIMSICIEYHEKSLVKHKELICERGAKIAESLTLPLIRNLRQLRDLCNKSKSEQTLLELNTFKFHIDYLSNMRSEQWTQEMLKTHIFIVIQQEMDNILKVLNPKITEPLDKNQEST
Ga0247723_10415572F017436N/AMDGQYRKMFRETVITVQKLSVSAAVFTVTERRNNIVPQKTTTRCRTVVKMMINEIKDDIATLSRNSDRYRFKRIQLALYVLLSQALSIEGSNERYKELKDMYYFMDRLKATTFDEWKNFLITGSTEFFDNKF
Ga0247723_10415573F008991N/ATPTMNLTVKITEQVKKKLEAVLKGTYDNRTIWMYYKVSLQILRDIIGDLIACHHTTHSLAEKDLYYDQNKVQIVDWIQWIQNRTSSDKLIDLDRLLSKLIRDKAENLVEALTEENPSDRMTTLSMLQMSIQMALFTEVQQLLRSPIVIQFCEENGWTV
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