Basic Information | |
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Taxon OID | 3300028025 Open in IMG/M |
Scaffold ID | Ga0247723_1041557 Open in IMG/M |
Source Dataset Name | Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1365 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: West Virginia | |||||||
Coordinates | Lat. (o) | 39.6017 | Long. (o) | -79.9761 | Alt. (m) | Depth (m) | 2281 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F008991 | Metagenome / Metatranscriptome | 324 | N |
F015440 | Metagenome / Metatranscriptome | 254 | N |
F017436 | Metagenome / Metatranscriptome | 240 | N |
Protein ID | Family | RBS | Sequence |
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Ga0247723_10415571 | F015440 | N/A | MEGISENERNFQLFKAGLSMVSCLTGEAIRVLEANLKGLQGLFFGLGQWGVIMSICIEYHEKSLVKHKELICERGAKIAESLTLPLIRNLRQLRDLCNKSKSEQTLLELNTFKFHIDYLSNMRSEQWTQEMLKTHIFIVIQQEMDNILKVLNPKITEPLDKNQEST |
Ga0247723_10415572 | F017436 | N/A | MDGQYRKMFRETVITVQKLSVSAAVFTVTERRNNIVPQKTTTRCRTVVKMMINEIKDDIATLSRNSDRYRFKRIQLALYVLLSQALSIEGSNERYKELKDMYYFMDRLKATTFDEWKNFLITGSTEFFDNKF |
Ga0247723_10415573 | F008991 | N/A | TPTMNLTVKITEQVKKKLEAVLKGTYDNRTIWMYYKVSLQILRDIIGDLIACHHTTHSLAEKDLYYDQNKVQIVDWIQWIQNRTSSDKLIDLDRLLSKLIRDKAENLVEALTEENPSDRMTTLSMLQMSIQMALFTEVQQLLRSPIVIQFCEENGWTV |
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