NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247722_10037397

Scaffold Ga0247722_10037397


Overview

Basic Information
Taxon OID3300028027 Open in IMG/M
Scaffold IDGa0247722_10037397 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 3H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1921
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005589Metagenome395Y
F018175Metagenome236Y

Sequences

Protein IDFamilyRBSSequence
Ga0247722_100373971F005589N/AYAFFFNFVESFETDSDAVPKFDDHYCIDHIFDTSNGQMRVKNHSAPEYCVSKYVGWSLNLPPVEKTNKQEIYMVIHRSSFTHKKIEFDEFLEPKNKRYTQEEWELLLSSIEKKFNRQKEWAKDGIKIPTQYEDGTQVFKTEEEFRAFSLGRRAYFLFHLVRNYNFTHLVHRLNIGYTSG
Ga0247722_100373973F018175N/AMLVENLPKNQKEYYQNKVREFEKRTGKSMNVKGVSKIYDCNIEYVEYNTSAAVDMMEKHGCYIYHDLLAEEDPRSNGTNWQMYGFAHLNGKTYKYYYETKQWGGEVKDFTHYVNKNKTWKAAKLDKANFPYLDPGEDYLPYAIENKHIGSNFDDFLKTNNIELKRDINWAVKMLEHGKMMSREGNPSLTLFPKKYDHAESTITTSDLFAEDWVVVPTKLFKDVLDDLNAGKTIRRKSWHPDWGVGKYSRYGKIIYLDLIADDWEVVDVVTEVNKQQEQILKDRNEH
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