NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265355_1013746

Scaffold Ga0265355_1013746


Overview

Basic Information
Taxon OID3300028036 Open in IMG/M
Scaffold IDGa0265355_1013746 Open in IMG/M
Source Dataset NameRhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)677
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameNorway: Oslo
CoordinatesLat. (o)59.9982Long. (o)10.7894Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043015Metagenome / Metatranscriptome157Y
F086702Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0265355_10137461F086702N/ALRALEEAAHGRTNANDPLTEQLKQCPEAFKVGEMLGKAFDSLKYAQDGGEVGDRYLPPAGVVIPPLA
Ga0265355_10137462F043015N/AVIGLPLDVTFPKLKGIRWRYCTRWDEGPAAVLGMSLLRLGICRPIDWSGSAVDFVERGFRRFCFQNRAVDAKRVWVGDLRITDSLFELTEQERNQVEAEREGMTDHLYLIGDYEAAASIPIGATIARLEAEHDLLPVAFYEVLTTNLYKWMRVYDYLDA
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