NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265349_1001506

Scaffold Ga0265349_1001506


Overview

Basic Information
Taxon OID3300028037 Open in IMG/M
Scaffold IDGa0265349_1001506 Open in IMG/M
Source Dataset NameSoil microbial communities from Maridalen valley, Oslo, Norway - NSE1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2147
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameNorway: Oslo
CoordinatesLat. (o)59.9979Long. (o)10.7895Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000703Metagenome / Metatranscriptome928Y
F015771Metagenome / Metatranscriptome252Y

Sequences

Protein IDFamilyRBSSequence
Ga0265349_10015061F015771N/AVASINVQASNGWFDLSVTDPSNARPGLFYFAESDTTPAFNSPRVYFMGASRNLYLQLGNQTLYWRAYSQYVGSLPSAPITFGSPPTAVAGGGTTGPTPLPSSGSGVLPNGQIRGGNGFGINPGSRVVRQTIL
Ga0265349_10015062F000703N/AVQVREYQESDLGALRAIHAAQGFAYPLPDLSNPLFITKLILSEQAASSPESEAVNGNIGERSGTQSPARQEKIIGAALLRLTAEAYLLLDPKAGTPRDRWKWLLQLHAATERDAWQRGLEDVHAWLPPPIASKFGKRIAQLGWKRDDAWTPYCKRLTAPPNNFCP
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