Scaffold Ga0256380_1010824

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0256380_1010824

Scaffold Ga0256380_1010824

Overview

Basic Information
Taxon OID	3300028039 Open in IMG/M
Scaffold ID	Ga0256380_1010824 Open in IMG/M
Source Dataset Name	Seawater viral communities from deep brine pools at the bottom of the Mediterranean Sea - LS1 2300m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1459
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location Name	Mediterranean Sea
Coordinates	Lat. (^o)	34.0321	Long. (^o)	27.821	Alt. (m)		Depth (m)	2300
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F099441	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0256380_10108243	F099441	N/A	TRMMLTDLDIKGESKTPRGVNVHLIESDDITYIWDDVLPLIRVSLRYAEGELEPEDLVIHLDTGQMNLWVAMEKDEVIAAMITEIITYPRKRILRVITLASKDGHGMDNWYDFLPMVEGFAINNGCSALEAWTRKGMARKLKDWKHSYSVITKDLKQRMQ

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