NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0256380_1019782

Scaffold Ga0256380_1019782


Overview

Basic Information
Taxon OID3300028039 Open in IMG/M
Scaffold IDGa0256380_1019782 Open in IMG/M
Source Dataset NameSeawater viral communities from deep brine pools at the bottom of the Mediterranean Sea - LS1 2300m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1096
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)34.0321Long. (o)27.821Alt. (m)Depth (m)2300
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003161Metagenome504N
F007893Metagenome / Metatranscriptome343Y

Sequences

Protein IDFamilyRBSSequence
Ga0256380_10197821F007893N/AWSDLLMAEPFGVHFEVTGPIFDGSGLKVMQGIINRGLFDIAVLEGANKVKDQLWGPPASQYWKSKPADRHGAHTRDLKRRVAASQPSDNLAIFDAGGVHYAPKIEGLYGMFAKATAAIERDKAALYHKYIGGALIEAFD
Ga0256380_10197822F003161GAGGLSRSGALDRIDVLLSTITDPAFVAVIRAEPLALSGTPVLAYWVQARTNGWQTLSDIGSTTTIMVRAYFRLQASADVRESIELELWDAMVEVDTKLRSDANLAGNCTDSTVGSATVATLDMGGALYRTATIPFDIQLYEEVSIVP
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