NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209526_10340155

Scaffold Ga0209526_10340155


Overview

Basic Information
Taxon OID3300028047 Open in IMG/M
Scaffold IDGa0209526_10340155 Open in IMG/M
Source Dataset NameForest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1007
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameAlgoma, Ontario, Canada
CoordinatesLat. (o)46.42Long. (o)-83.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012292Metagenome / Metatranscriptome282Y
F063996Metagenome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0209526_103401551F063996GGAMKKYFFARLFVRTAKGLALFVLLIGIGFCALRFYQANVAADSAAYQPSPRLQQTLDELKDTFLSTEQIVDSFNAGNQSPTPSVEGPRFPLVIDSSEDLDRIAAELSRVDQERQKLKESVVMRFETLV
Ga0209526_103401552F012292N/APPASSTSSMLSSDPAAVDSAVKSRMITDFKEQTRSVLSRVGDATGNFREVDQLESVQQLPPPVSESVNSLVDRARDFRAKLGYETALSECRTETETVDALSVIDQTTRGIADKNVPDASSKLAEFLKSNPNPLADAQKPLWHYLTSVRALCSRLEKEAETHSQRAAAFASDGKTGDAIREYQEAYLTFPNPVTAEKIRELRRNSLGL
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