NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0256405_10000398

Scaffold Ga0256405_10000398


Overview

Basic Information
Taxon OID3300028048 Open in IMG/M
Scaffold IDGa0256405_10000398 Open in IMG/M
Source Dataset NameBovine rumen microbial communities from Lethbridge, Alberta, Canada - RJG_02
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)144619
Total Scaffold Genes122 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)42 (34.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location
Location NameCanada: Alberta
CoordinatesLat. (o)49.6935Long. (o)-112.8418Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013263Metagenome272Y
F023770Metagenome / Metatranscriptome208Y
F096242Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0256405_10000398104F013263N/AMENQEFKTTNLKELRELRTQEKAIKARIDEISTEATNEAVAILAAKGLEKGEFTIPGVGTFQLQRTEVFDFADYNKYKQEQAVKWRENAKEKVKEQNLVKARTAIMNGYVKTFVELYPDKQPDEIKLTVKVID
Ga0256405_10000398107F096242N/AMLLKLIKTRQFISGAHCEVWEMNHLTGNRLLANVFVLNEHLPLELIYRLTVHRTGIFIQGKLCGWQWDCQNVETAVTEYLQSVQEIHEEIRIEVCVPEPFLPGYPHVDRNPDDYPIVLGDFD
Ga0256405_10000398109F023770AGAAGMAKVEFDPGIDSVRGILMGTDPFYIRRYPGREGVMHIVQARPNRSDHIPSAAEAHTRIVFAQKYGHEKHLAFLERTMKGQLQLPFEINPVDQ
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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