Basic Information | |
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Taxon OID | 3300028048 Open in IMG/M |
Scaffold ID | Ga0256405_10002290 Open in IMG/M |
Source Dataset Name | Bovine rumen microbial communities from Lethbridge, Alberta, Canada - RJG_02 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 44891 |
Total Scaffold Genes | 66 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 59 (89.39%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp. | (Source: UniRef50) |
Source Dataset Ecosystem |
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Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | Canada: Alberta | |||||||
Coordinates | Lat. (o) | 49.6935 | Long. (o) | -112.8418 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F069538 | Metagenome | 123 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0256405_1000229063 | F069538 | AGGAG | MLEVVQEEDKVKCSKDLNYIKLSLSNLRVGHSQLMLDLPLDYHTEEFDNAFIDLVDELEDLVKDYEERIL |
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