NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0256405_10002830

Scaffold Ga0256405_10002830


Overview

Basic Information
Taxon OID3300028048 Open in IMG/M
Scaffold IDGa0256405_10002830 Open in IMG/M
Source Dataset NameBovine rumen microbial communities from Lethbridge, Alberta, Canada - RJG_02
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)37828
Total Scaffold Genes53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (20.75%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location
Location NameCanada: Alberta
CoordinatesLat. (o)49.6935Long. (o)-112.8418Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013263Metagenome272Y
F023770Metagenome / Metatranscriptome208Y

Sequences

Protein IDFamilyRBSSequence
Ga0256405_1000283042F013263N/AMQTTNLKELRELRTQEKAIKARIDEISTEATNEAVAILAAKGLEKGEFTIPGVGTFQLQRTEVFDFADYNKYKQEQAVKWRENAKEKVKEQNLVKARTAVMAGYVKTFVELYPDKEPDEIKLTVKVIGLD
Ga0256405_1000283047F023770AGGMAKVEFDPGIDSVRGILMGTDPFYIRRYPSKDGVMHIVQARPDRSGHTPSPAEANTRILFAQKYGHEKHLAFLERKFKDQLTLFPPELAEGSPPEPET
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