NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0268338_1001580

Scaffold Ga0268338_1001580


Overview

Basic Information
Taxon OID3300028055 Open in IMG/M
Scaffold IDGa0268338_1001580 Open in IMG/M
Source Dataset NamePhyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_NF_07AUG2017_LD1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1284
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)42.39Long. (o)-85.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000285Metagenome / Metatranscriptome1374Y
F007677Metagenome / Metatranscriptome346Y

Sequences

Protein IDFamilyRBSSequence
Ga0268338_10015801F000285N/AAFRSIWVRLGPFGCFTKHGAKRAELVQKFVPRSRVGILRNEHTLSNPLDPKLTFWCVLYHLGAFGTVWLPHKTRCKTGRTSAKVHARSRVGIFRKERTLSTPLDPKLMFWCVSYHLGAFEAFWLPYETRCIMGRTSAKVCATKWHRNFSQ
Ga0268338_10015802F007677AGGMGWIGCVHCKKNPTRLRGTNFCTSSDCFTPSFVRQPNGPECTHMVQKHQNVSLGSNGLDRVCSLRKILMRLRGTNFCTSSAHFALSFVRQPNGPECTQIVRNAPKHQFNVQWGGSGAFIAKNSDATSWHKLLH
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