NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0268340_1014757

Scaffold Ga0268340_1014757


Overview

Basic Information
Taxon OID3300028064 Open in IMG/M
Scaffold IDGa0268340_1014757 Open in IMG/M
Source Dataset NamePhyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_28AUG2017_LD1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)912
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)42.39Long. (o)-85.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000492Metagenome / Metatranscriptome1078Y
F068340Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0268340_10147571F068340N/AMFXNKFLAVTEXSQMHPNTTKRTETLVWGPMGLIGSVRCEKTXSDFVARTFALIAPVHPVLHRVSCSYEMIPNAPKHYETHQNMSLRSNGADWVHSLRKISTXLCGTNFCINCSSSSRFVPTFMQLRNDPKCTQKLXNTPKYEFRVQWGGSGAFVAKNTMXLRGTNFCINXTSSVCFETSFMPLRNDPKCTQILRNAPKH
Ga0268340_10147572F000492N/AGELVELMQKFVPRSHVGIFRNERTQSTPLDPKLMFWYVS
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