NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247563_1011196

Scaffold Ga0247563_1011196


Overview

Basic Information
Taxon OID3300028095 Open in IMG/M
Scaffold IDGa0247563_1011196 Open in IMG/M
Source Dataset NameMetatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 11R (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1732
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018186Metatranscriptome236Y
F038251Metatranscriptome166Y

Sequences

Protein IDFamilyRBSSequence
Ga0247563_10111961F038251N/AILSFTLHTVGMAKSVASFLTIVGFSLFEVGTCNAFLRIKPNTESGHVNSDNIERTLLEEIEGQIGNANIRGRLARLESALHPMFLSLPKNEHGNLDHGTVRYALHRLFVQRHGWYIKGLDNAGQSWNESSHAIS
Ga0247563_10111962F018186N/ALKDQAADFVQSVFEHKLGDRGLNLHELAVLGATLEHLIHDESVERLNKAYAVTRHDTNASMTMEQGAEITNAYMKLFILGDEIGSTTSNSRMNQIYPGWKDTKDFAKAILKDTANEMRREGARDPWSNLDFNVVSKSVEEIADQYGRFQDGECRAMKTDLINLGDRNIGRVPLSNFYRPALEGKSWQFMESVDYLRSLGALDETDPNVPSVIVPNYIGSQSNCVVSTSYYSVCCIDECEGLTSQLEKEFASPEADPKEVLAVVAEMSSSTVTGPRELSAPLVRRLEDIAGGHHGTVPLHGRLFAQWMHHAFPRECPFPHAAGTTNPQAASEWIEQAGSARATHKEMKKVTAAIDAAGGVPEDEELTHWTHEEELLVPRAAPRREGSSLWGGLRNVMFLSALVAVGVRAASTTGTASTSLYGGIDGKAGKLV
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