NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0256349_1040078

Scaffold Ga0256349_1040078


Overview

Basic Information
Taxon OID3300028101 Open in IMG/M
Scaffold IDGa0256349_1040078 Open in IMG/M
Source Dataset NameMetatranscriptome of freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Cont_RepB_0h (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)800
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Postciliodesmatophora → Heterotrichea → Heterotrichida → Stentoridae → Stentor → Stentor coeruleus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Louisiana
CoordinatesLat. (o)29.8571Long. (o)-89.9778Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051728Metagenome / Metatranscriptome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0256349_10400781F051728N/AKQAFDKWRKYVQAVNNNELLDGVRSQKLLVVLSRVPVRRLKDVSERILGDGSKVKGAIKKIYATLQRMPKTAIEKWKKYLQGLKEKSFFDNLRSAKLLNCLSRIPTRRMKDASQRILGGGNKIKGCLQNLVNGLKNIPKNALKTWRNYVQAVKDKKLYDGARSAKLLNSLERIQRRTLKESHERIRGLMFASPAVKAVLKRMDGLLKRKPKQAFDKWRKYVQAVNNNELLDGVRSQKLLVVLSRVPVRRLKDVSERILGDGSKVKG
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