NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0256368_1001355

Scaffold Ga0256368_1001355


Overview

Basic Information
Taxon OID3300028125 Open in IMG/M
Scaffold IDGa0256368_1001355 Open in IMG/M
Source Dataset NameSea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - SB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3080
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (22.22%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Sea-Ice Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)71.3731Long. (o)-156.5049Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016596Metagenome / Metatranscriptome246Y
F018080Metagenome237Y
F052205Metagenome / Metatranscriptome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0256368_10013555F016596N/AMTKKYSLEKIRKSRNEFEALLRIYGISNSTFCKVIGVNYATSRNFIKVPTNLRFIHAHRLADFIGLTVQDVVDTIVYDLK
Ga0256368_10013556F018080N/AMEYLNIEIFKHFLKVYTYIVWNKKSMLGFILEDDIMKLLDEKQILDFYHFDKTLFRVRVDKIEKYLSKND
Ga0256368_10013557F052205N/AMSLSNDDIDELFDGKPSEITNSQWLTIEGNIDFTSLTTTIKSDILNRLNDLSEEEAEEIITILYNNRYEKDPQKQWLKMFRDGVFKHRDF
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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