Basic Information | |
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Taxon OID | 3300028125 Open in IMG/M |
Scaffold ID | Ga0256368_1001355 Open in IMG/M |
Source Dataset Name | Sea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - SB |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3080 |
Total Scaffold Genes | 9 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (22.22%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Sea-Ice Brine → Extreme Environments Viral Communities From Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Alaska | |||||||
Coordinates | Lat. (o) | 71.3731 | Long. (o) | -156.5049 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F016596 | Metagenome / Metatranscriptome | 246 | Y |
F018080 | Metagenome | 237 | Y |
F052205 | Metagenome / Metatranscriptome | 143 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0256368_10013555 | F016596 | N/A | MTKKYSLEKIRKSRNEFEALLRIYGISNSTFCKVIGVNYATSRNFIKVPTNLRFIHAHRLADFIGLTVQDVVDTIVYDLK |
Ga0256368_10013556 | F018080 | N/A | MEYLNIEIFKHFLKVYTYIVWNKKSMLGFILEDDIMKLLDEKQILDFYHFDKTLFRVRVDKIEKYLSKND |
Ga0256368_10013557 | F052205 | N/A | MSLSNDDIDELFDGKPSEITNSQWLTIEGNIDFTSLTTTIKSDILNRLNDLSEEEAEEIITILYNNRYEKDPQKQWLKMFRDGVFKHRDF |
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