NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0256368_1019318

Scaffold Ga0256368_1019318


Overview

Basic Information
Taxon OID3300028125 Open in IMG/M
Scaffold IDGa0256368_1019318 Open in IMG/M
Source Dataset NameSea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - SB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1198
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Sea-Ice Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)71.3731Long. (o)-156.5049Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021402Metagenome219N
F077486Metagenome / Metatranscriptome117N
F090862Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0256368_10193183F090862AGGAMTNYVDPKLVAKALARVTKSSNVYYSNAVKKIKKNRKQYYQNKETKTLQKSLSKDRFNTYLEELYKHDND
Ga0256368_10193184F021402GGAGGMITTNLTVDELDRFLQISSFCDSKMPKVKAKSLPTMYKVIENAIGVGEDADSIKNLDKYAATLKITLTSRQITIYDFVLLVMLDAKASDRELIYLRNFPHRLSLRKMKRMYLDWSHTKIGYEYEKALKNVCKYANRNLKKYIXQVDRKVKEKFYTSYIKVFYLALMMKFF
Ga0256368_10193185F077486AGGAGMIRNTKTLTNPISMFKIDIVKVFKKKETLKDILKCKKLQKKHKLQDFRSIXINL
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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