NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0256368_1020037

Scaffold Ga0256368_1020037


Overview

Basic Information
Taxon OID3300028125 Open in IMG/M
Scaffold IDGa0256368_1020037 Open in IMG/M
Source Dataset NameSea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - SB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1178
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Sea-Ice Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)71.3731Long. (o)-156.5049Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026158Metagenome199Y
F047368Metagenome150N
F052258Metagenome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0256368_10200371F052258N/AHEQTMKKTKQTISERKLVNSERETEAAMILFACILGGVILILLAIAMG
Ga0256368_10200372F026158AGGAMLQFNSTSESRSSAVQCMEGFKDKIEMLMKAGDILDHCTRGRSTVEDARAARERSLEIWKKGSTIVEAARQGGAYAQSFRAWLIKEGHHTPRGK
Ga0256368_10200373F047368AGGAMPNECGAIKHAHTADEALKHLAVGNKKKGYKLKRSGVSIMVLNIEEIKDT
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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