Scaffold Ga0256368_1068152

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0256368_1068152

Scaffold Ga0256368_1068152

Overview

Basic Information
Taxon OID	3300028125 Open in IMG/M
Scaffold ID	Ga0256368_1068152 Open in IMG/M
Source Dataset Name	Sea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - SB
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	612
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Sea-Ice Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location Name	USA: Alaska
Coordinates	Lat. (^o)	71.3731	Long. (^o)	-156.5049	Alt. (m)		Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043081	Metagenome	157	N
F068130	Metagenome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0256368_10681521	F068130	AGG	MKHISTQQLSALIGYLKSQPWEQVHPLITMLSSLPAVEPKKDTI
Ga0256368_10681523	F043081	N/A	QANLKIDKLKDVIDGHKSWHASDKQQIYDLKIALGELRNLDVVNAQYRILIAELKRDNRLIAKQCDDQLKQFRNKGGL

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.