NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0233401_1024287

Scaffold Ga0233401_1024287


Overview

Basic Information
Taxon OID3300028127 Open in IMG/M
Scaffold IDGa0233401_1024287 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 49D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1570
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036916Metagenome169Y

Sequences

Protein IDFamilyRBSSequence
Ga0233401_10242872F036916N/AMDKDFQDHISDLPVKLFKLVSGEQIIAYTHNLDDESNGALIGIEEPMKVSVEEDHHYVMTPWLPFSSQTLHVIEDFNIMITTDVTDDVKAHYMKIILDEIQTDKQLMEEQVKMLKGNATT
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