NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228642_1104618

Scaffold Ga0228642_1104618


Overview

Basic Information
Taxon OID3300028131 Open in IMG/M
Scaffold IDGa0228642_1104618 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 53D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)708
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Autographiviridae → Pelagivirus → unclassified Pelagivirus → Pelagibacter phage HTVC031P(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002485Metagenome / Metatranscriptome555Y
F091859Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0228642_11046181F002485GGAGGMKTQIDNKSLYFENIGDKTIYYSYNTTVAIKTPIETYVCENVWSVTTAKHLNRIEELTGSNREYRMRYKDFREFCINNN
Ga0228642_11046183F091859N/ATLFMRTKQKLDKRTRARLRELSRTESVYNLQGSNSTYRGFSTHGGKSKRCYYQAISNANQNQLANFVDSGRSQKIYS

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