NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0228606_1098873

Scaffold Ga0228606_1098873


Overview

Basic Information
Taxon OID3300028135 Open in IMG/M
Scaffold IDGa0228606_1098873 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 7D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)748
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006870Metagenome / Metatranscriptome363Y
F007087Metagenome / Metatranscriptome358N

Sequences

Protein IDFamilyRBSSequence
Ga0228606_10988731F007087N/ALADDFKLVCEGEESNYRNDVLENTSKASFTLHVRDDSIVIDSMTYKSKTFDYGAIKGSSKYVKEDAQVVLETTQVSNECDTALLNVKLNRSNGMIESTAKRIGACDGSSFTTSTKFKGKC
Ga0228606_10988732F006870N/AMKKTSLFFLLALFLLVTSKASSLETKLSPQGSDRYNFYIKGDAKTSEKNLREVFQNKVNEVCGTRFEIINIKTDYINKEGSKNNVLNGTFKCFVNSQM
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.