NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0268343_1003981

Scaffold Ga0268343_1003981


Overview

Basic Information
Taxon OID3300028150 Open in IMG/M
Scaffold IDGa0268343_1003981 Open in IMG/M
Source Dataset NamePhyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_MAIN_28AUG2017_LD1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)868
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)42.39Long. (o)-85.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009663Metagenome / Metatranscriptome314Y
F024245Metagenome206Y

Sequences

Protein IDFamilyRBSSequence
Ga0268343_10039811F024245AGAAGMFIAKKQDATSEAQNGALYAPQNPISQRVPPGNGIARN
Ga0268343_10039812F009663N/ALRKHKVVHFMHPKTRSHNLYLPVKESRETTQKLSFGPKEVDWACSLRKNKTQLRKHKVVHCMHPKTRSHNGYLPATESRETTQKLSFGPKEVDWTCSLRKNKTQLWKHKVVHFMHPKTRSHNLYLPATESGETTQKLSFGPKEVDWASSLRKNKTQLQKHKVVRFMHPKTRSHNGYLLATESRETTQKLSFGPNEVDWECSLRKNKTQRPKHKVLHFMHPKTRSHNMYLTATESHKST
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