NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0257117_1035205

Scaffold Ga0257117_1035205


Overview

Basic Information
Taxon OID3300028175 Open in IMG/M
Scaffold IDGa0257117_1035205 Open in IMG/M
Source Dataset NameMarine microbial communities from Saanich Inlet, British Columbia, Canada - SI112_135m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1447
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Inlet → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameCanada: British Columbia
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)135
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029271Metagenome / Metatranscriptome189N

Sequences

Protein IDFamilyRBSSequence
Ga0257117_10352053F029271N/ADIKELLDVDFRKDKFLDNQYNNSPSFNYDAAESYVANIHQFLSEKYGEVVIYNFMQEVESLRITTLKMYIESNIASYQRFGAQK
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Institute for Fundamental Biomedical Research
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