NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265593_1016203

Scaffold Ga0265593_1016203


Overview

Basic Information
Taxon OID3300028178 Open in IMG/M
Scaffold IDGa0265593_1016203 Open in IMG/M
Source Dataset NameSaline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2011_5_24_36m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2436
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameCanada: Sakinaw lake, British Columbia
CoordinatesLat. (o)49.68Long. (o)-124.009Alt. (m)Depth (m)36
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025652Metagenome200N
F025687Metagenome / Metatranscriptome200N

Sequences

Protein IDFamilyRBSSequence
Ga0265593_10162036F025652N/AMWELPAELLCHSTEIVFEFMNNKTYFYRVAHKKYSWNGRYPMGPYAFFNTSRFLLNNQKIPFSACAYEKFVEFVSKEIVEYKKFNINNSNLKWVPTLPNAWRPGPFEDIDLREKMILRMGAMTKNGKFHLYGFDSLMQALQWYNNQEELQFLEDNEFRMYKFKVKSKNLIVGKTQSVYFPDINDDMDMLWISSTKLSDLNKSININSTTQTINKL
Ga0265593_10162037F025687N/AMEKLNRKGFFSTLFGGIAGVVVGTNVKASEPKPVVEKVLTCDKLAFTHSSGASCVMQ
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