Basic Information | |
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Taxon OID | 3300028178 Open in IMG/M |
Scaffold ID | Ga0265593_1024721 Open in IMG/M |
Source Dataset Name | Saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2011_5_24_36m |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1868 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (100.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Canada: Sakinaw lake, British Columbia | |||||||
Coordinates | Lat. (o) | 49.68 | Long. (o) | -124.009 | Alt. (m) | Depth (m) | 36 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F017294 | Metagenome / Metatranscriptome | 241 | Y |
F061661 | Metagenome | 131 | Y |
F103126 | Metagenome | 101 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0265593_10247213 | F017294 | AGGAG | MSHQMHLDKGPTGIAARTACGRNILRTPMSTDWENFKMEAAAYRCIKCVSSKQFEVNTRMDARKAI |
Ga0265593_10247215 | F061661 | AGGAG | MRYREHYTIQPVIRKWADIALAVVIGVGLAFFFFMGV |
Ga0265593_10247216 | F103126 | GGAG | MSESMQKEIDALVAELSPKPGSLGILTTHEMVSHLRMAATRGTLIGWVGAERLTSARHKQDYDNLAQHCKQLELEIMELKR |
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