NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265593_1061218

Scaffold Ga0265593_1061218


Overview

Basic Information
Taxon OID3300028178 Open in IMG/M
Scaffold IDGa0265593_1061218 Open in IMG/M
Source Dataset NameSaline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2011_5_24_36m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1056
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameCanada: Sakinaw lake, British Columbia
CoordinatesLat. (o)49.68Long. (o)-124.009Alt. (m)Depth (m)36
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009531Metagenome / Metatranscriptome316Y
F040623Metagenome / Metatranscriptome161Y
F070104Metagenome123N

Sequences

Protein IDFamilyRBSSequence
Ga0265593_10612182F009531N/AMTQQVAIYEMNYSCSPGGVDCWEATIQGYGESTTASDFKSAGQALNWVLDRYPDEMLELVVTSLPAYEKEYA
Ga0265593_10612184F040623GAGGMKVRISLEQTIDIDDAMSNDIGFELYGPPDMSNDDKIDYLMARFAEDIDTMVKYDEVLGNISVEYIED
Ga0265593_10612185F070104GAGMLGYTETDIAVMTDAMEDAIKSGRLSSEVTDGLEKAMSF
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