NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0257127_1029996

Scaffold Ga0257127_1029996


Overview

Basic Information
Taxon OID3300028189 Open in IMG/M
Scaffold IDGa0257127_1029996 Open in IMG/M
Source Dataset NameMarine microbial communities from Saanich Inlet, British Columbia, Canada - SI060_135m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1972
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Inlet → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameCanada: British Columbia
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)135
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F062497Metagenome130N
F080488Metagenome115N

Sequences

Protein IDFamilyRBSSequence
Ga0257127_10299963F080488AGGMEYKEWYSVGVEKGYLRKYTTNLVDGLASNIQILEKAFTQSVQDKLGKSGTEKMEKYGHQLYWLMIQRDMMDNDDYWKETDDV
Ga0257127_10299964F062497N/AMELFNISVVDFYWRTFLLETKIGNRDGWRRIMIKMKELLSLKEDIDKDIKRNIDELGQLDREIEELQKKLKPLRKQYGELVDNVLPVLENLGKEHYKTRNYIFKIIRKGYERQSFQYKEGFNRALDKVNKNVKRILEQVLDDTKKMVKVSASFQVKPIEIKESSFTDWIKKYTRKVVRKIIPYMKVIVKTNNDLRKMI
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Institute for Fundamental Biomedical Research
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