Scaffold Ga0257108_1001856

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0257108_1001856

Scaffold Ga0257108_1001856

Overview

Basic Information
Taxon OID	3300028190 Open in IMG/M
Scaffold ID	Ga0257108_1001856 Open in IMG/M
Source Dataset Name	Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_1000m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6005
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (88.89%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location Name	Canada: Northeast Subartic Pacific Ocean
Coordinates	Lat. (^o)	50.0	Long. (^o)	-145.0	Alt. (m)		Depth (m)	1000
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003122	Metagenome / Metatranscriptome	506	Y
F051205	Metagenome / Metatranscriptome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0257108_10018561	F051205	GAGG	MKKLLLLFVMMATWMVVGCGTSTGGCYGHWVKGPGHHRGTRTLLKDAHLPYYQCVDENNK
Ga0257108_10018562	F003122	GGAG	MIESLIFGLVLLSVICLWLLIEGRKSPKFLVWFIPLLLVLVSSTYVTYTSILGYPRAANPKEGLYLKHYIDEPNWIYLWVVYKEKIPISYQLVYSRETHKALEGVREKSEGEGKFMVLREPREEGIEGEEEGAENHDGGITIGGDISFYEWEYKSDSQLKNPEESR

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