NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0257108_1081436

Scaffold Ga0257108_1081436


Overview

Basic Information
Taxon OID3300028190 Open in IMG/M
Scaffold IDGa0257108_1081436 Open in IMG/M
Source Dataset NameMarine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_1000m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)964
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameCanada: Northeast Subartic Pacific Ocean
CoordinatesLat. (o)50.0Long. (o)-145.0Alt. (m)Depth (m)1000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006865Metagenome / Metatranscriptome363Y
F029469Metagenome / Metatranscriptome188Y
F043443Metagenome / Metatranscriptome156Y

Sequences

Protein IDFamilyRBSSequence
Ga0257108_10814361F043443AGGVLDDKLLKLQRKKLQRQILYLRSELEETQIIFQECLGDFDSEFGKYFKDNINKKNKNESMDPVEFDIPEKDVNIVFRMIAQKTHPDKLVKEDTSTPSYKAKVEMYKEAQRSVKNKDWSRVVEIAMELDIDISEVKNDDSEYLVESVKKLTN
Ga0257108_10814362F029469AGGAGMSNKPEHTSYFEEIIRRLKEMEIEFRKAPNQPEDKIYGEMDGKIELMELPFPPEMFDRLSSDEKETLFIWLNRRNMPQA
Ga0257108_10814363F006865GGAGVGKIGQIVKINDVLYEVLGTMDVEKSNDKGTEYWKERWGSDTILRNGNVYYYCRTIINAEFEDI
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