NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0257107_1005374

Scaffold Ga0257107_1005374


Overview

Basic Information
Taxon OID3300028192 Open in IMG/M
Scaffold IDGa0257107_1005374 Open in IMG/M
Source Dataset NameMarine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_500m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4379
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (76.92%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameCanada: Northeast Subartic Pacific Ocean
CoordinatesLat. (o)50.0Long. (o)-145.0Alt. (m)Depth (m)500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003091Metagenome / Metatranscriptome508Y
F005749Metagenome391Y
F013775Metagenome268Y
F015023Metagenome258Y

Sequences

Protein IDFamilyRBSSequence
Ga0257107_100537413F003091AGGAGMSMLPRKPITKPGEGKQRQKYISQERYLEERYQISLGLKGPKRLQGESFEDFCIRRKAENGLLKE
Ga0257107_10053742F015023N/AMIKRENKVVLEKNIKDGVLKFTEHLNNTMDKPDGYSYELNTRGSKYFKVEMLSHGSRSVYCFIEKSTGNILKSAGWSAPAKGTRGSVLIVDSYKHSDWSGGWLYKIFGNVYGMVG
Ga0257107_10053745F013775AGGAMVEKRQYETVKEFAKDYRTEIIPMMKSKGFTLSINTSKGSYWNDGRMNFQIKKVPSNFYVWTNEYNRYNKTEKSQKLINAIRDRVKNLISVTTDLDVDLNFDYHKNIRYKEIPEGWDTNE
Ga0257107_10053748F005749AGGAGMKKSWLLMMSFDEHDGSSNEIKTLYHGKTKRNMVKTMDLFQDMNEHLVLALVEVDKKSTYDKIVDKEDSEEMFFMDSKSNWNNGKTYEDLKEEALEEMLMGSLIKGEMGYA
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