NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0257107_1010412

Scaffold Ga0257107_1010412


Overview

Basic Information
Taxon OID3300028192 Open in IMG/M
Scaffold IDGa0257107_1010412 Open in IMG/M
Source Dataset NameMarine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_500m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3048
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameCanada: Northeast Subartic Pacific Ocean
CoordinatesLat. (o)50.0Long. (o)-145.0Alt. (m)Depth (m)500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013775Metagenome268Y
F015023Metagenome258Y
F041256Metagenome / Metatranscriptome160Y

Sequences

Protein IDFamilyRBSSequence
Ga0257107_10104122F013775GGGGGMEKTYETIKDFAKDYRTEIVPMMKSKGFTLSINTSKGSYWNDGRMNFQIKKVPSNFYVWTNEYNRYSKTEKSQKLLRVIRERVNGILLESNLDIDLNFDYHKNVRYKEVPEGWDINEV
Ga0257107_10104123F041256GAGMNLNEYLIENDRHLGDVVILFSVGTALDKVSGDTFPLMADNTIGFDEPMNIMDMDDDRFSSSEWFDSLAFGEKEIVDEVMDNLSYEEWAESHIGEPESIWWGER
Ga0257107_10104126F015023GAGMNTTFKHIDLDDSVNDFMNHLNNTMEKPDGYSYELNTRGSKYFKVEMLSHGSRSVYCFINKQNGEILKAAGWSAPAKGIRGSVLIVDSYKNSDWSGGWLYKIFGNVYGMVG
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