Scaffold Ga0257114_1037452

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0257114_1037452

Scaffold Ga0257114_1037452

Overview

Basic Information
Taxon OID	3300028196 Open in IMG/M
Scaffold ID	Ga0257114_1037452 Open in IMG/M
Source Dataset Name	Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI112_10m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2230
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Inlet → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location Name	Canada: British Columbia
Coordinates	Lat. (^o)	48.6	Long. (^o)	-123.5	Alt. (m)		Depth (m)	10
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F091332	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0257114_10374523	F091332	N/A	MSELKNRDEEIQGNTDTQIWFRAQIALKNEGNFSRIPGTPSYSESRNKIYGRRSARTIFNNLRTDKKLYRNYILSYSVHGREHDLLSESAINDEVDSRTDVLFLRMRTPELDEICWNWSQELLLHRDYLRSVGIDLPIENDNRKIIQVEMMVRS

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