NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0257114_1090779

Scaffold Ga0257114_1090779


Overview

Basic Information
Taxon OID3300028196 Open in IMG/M
Scaffold IDGa0257114_1090779 Open in IMG/M
Source Dataset NameMarine microbial communities from Saanich Inlet, British Columbia, Canada - SI112_10m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1260
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Inlet → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameCanada: British Columbia
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007003Metagenome / Metatranscriptome360Y
F074009Metagenome120N

Sequences

Protein IDFamilyRBSSequence
Ga0257114_10907791F007003AGGMIHYFTKNIDEKKYNDIIQRIIMINGHDGTNNSGYRAWKNFEDNWELNIIPVTDQEDFKVYYKHLDIETSDGIAWGVTGVKVIYMFVNDVKNPFIIRQNIMPLGHELLHAIYQDAVGTFHITRVYDSPEGRANTRAAAATVIVHDNWYGSKETIKVWIRWGMIWLPITIPFIPVKKAKETYPI
Ga0257114_10907792F074009N/AMGTKIKGKYAGQCKICGSDWKVGEDIFYQKDPKAICSDKECFEEQGGKFTPYASQGTLTSSTSGWGKTPIITKLPEVEISDEVKKITEYWDQFFVVAHHKTKAVYPQEDVNGDRFGQIRSKMMDQFMGLTNLIKE
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