NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0257114_1153145

Scaffold Ga0257114_1153145


Overview

Basic Information
Taxon OID3300028196 Open in IMG/M
Scaffold IDGa0257114_1153145 Open in IMG/M
Source Dataset NameMarine microbial communities from Saanich Inlet, British Columbia, Canada - SI112_10m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)886
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Inlet → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameCanada: British Columbia
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F064190Metagenome / Metatranscriptome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0257114_11531452F064190N/AAADLNVSTNTIINKYVYNVVYDASNNQMFVQAVCRYFGLHGDFKNVDIVYADGDNVCPSTGTGSPWPTGDDNCPSLIYRKGQSVASNPTWNTAKFINNGKTLPKMTWLMFVYDKCKIPGKGKPRWIIKNTTNSSMADIYFESKYLTYLFKNSGKYEITLELTDTNGNKYKKNRNILVIK
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