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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300028197 Open in IMG/M |
| Scaffold ID | Ga0257110_1000677 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_10m |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 16063 |
| Total Scaffold Genes | 45 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 36 (80.00%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Canada: Northeast Subartic Pacific Ocean | |||||||
| Coordinates | Lat. (o) | 50.0 | Long. (o) | -145.0 | Alt. (m) | Depth (m) | 10 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F017831 | Metagenome / Metatranscriptome | 238 | Y |
| F071269 | Metagenome / Metatranscriptome | 122 | Y |
| F078785 | Metagenome / Metatranscriptome | 116 | N |
| F085737 | Metagenome / Metatranscriptome | 111 | N |
| F095522 | Metagenome / Metatranscriptome | 105 | Y |
| F105234 | Metagenome / Metatranscriptome | 100 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0257110_10006771 | F105234 | GGAG | MTKYSDNSFEERNFENKQDQADFRMQQMLQEKGFVRGASESQLEKYSHIAGSYQKIGTDPKDGFVPRFYDVRKVLLIPDYVIYPRDSVKLFLSEVKGTNKLKEDDFNSLIELQQRAESFNDTSMYITMEVGLWWFPNPSKNKIGKYYSYPSIEKQWMSNDNWKVYEGEKDTKGNPKRYKEMNWKL |
| Ga0257110_100067723 | F071269 | AGGAG | MAKKNQYKVDFYQTVYLGSQVVEAEDRKQAISDAEDMNWKAGIGLKWSEDFDAKIDTDHDYLFICTSHSKQECEDDECNEEYWEKIEGVLK |
| Ga0257110_100067730 | F017831 | GGAG | MITECMLFLASVIPMGVDETKVIEQYLNCNDHVPQSMQKHASLYVEHFDKDNINTAVRIGWCESRGKVDAYRSDNGDTGLMQFVSWTWNWVAEKYELPEWDTWVVTRYGRPYTGKTLKTDIGFSFDRVQYVPYYNIMFASILAEDIYGKTQWRDWSSSEWCWGDEKKWKEKWLNE |
| Ga0257110_100067732 | F078785 | N/A | MNGYEYEPIHERYEFGNYVVIVHHLPLWLQFEARLYITTQTGSIELGKFIGNSILQAKTRAINSIGGYSGIIPKDETKIS |
| Ga0257110_10006774 | F085737 | GAG | MNMDIPLNKLPQSLLPIKTHDWKNACEWIRARWGRTSWDDDTILFEDSRFWSQEELDAGLQYCLQKGGDFPPTFAELSKQVKEWRGNHLENRLAEFNQELPPERGSLGDYLLTIKAESFAHACYMNVQERARRSELLVTEDKEAYKKWTMNWNEAKATYMNSSQSLGKSMSMSQSTDWDEIIAP |
| Ga0257110_100067743 | F095522 | GAGG | MDINVQLTSPPEKVFTSKGGSKYDDAIRIAIENKGEWLRIGAVPIEKRNSIYSTASAIKNGRLGNVPHGESITIICRRVDNEVVMFMKSV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |