NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0257110_1001533

Scaffold Ga0257110_1001533


Overview

Basic Information
Taxon OID3300028197 Open in IMG/M
Scaffold IDGa0257110_1001533 Open in IMG/M
Source Dataset NameMarine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_10m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10856
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (85.71%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameCanada: Northeast Subartic Pacific Ocean
CoordinatesLat. (o)50.0Long. (o)-145.0Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013594Metagenome / Metatranscriptome270N
F073584Metagenome / Metatranscriptome120N

Sequences

Protein IDFamilyRBSSequence
Ga0257110_100153317F073584AGGAGMGKIKTDELEERVGSAGITVNSTVKIDTITEKTSNAGVTIEGVTLKDGSIVGSVDIGLVIALG
Ga0257110_100153320F013594GAGMSTTYGDRPLRVTFTSNDSSGVAEFFDGSETGAIGITVPRFSTTERNAVSAGSVKQGMIIFNETDGKMQVYTGSDSSNTSSSWTDIGGGTILADADGNTNIEIGATTSDEIDVDIAGTKIATFDGAGINIEAGAVGIRHAGTITGTATIAAGENIGLFGDVTFTGTVTVAGEMVVV
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