Scaffold Ga0257110_1175086

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0257110_1175086

Scaffold Ga0257110_1175086

Overview

Basic Information
Taxon OID	3300028197 Open in IMG/M
Scaffold ID	Ga0257110_1175086 Open in IMG/M
Source Dataset Name	Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_10m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	847
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location Name	Canada: Northeast Subartic Pacific Ocean
Coordinates	Lat. (^o)	50.0	Long. (^o)	-145.0	Alt. (m)		Depth (m)	10
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F078756	Metagenome / Metatranscriptome	116	N
F082541	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0257110_11750861	F078756	AGGAG	VSDTIGHLVDRVFREYLEPADNVESYSYLTGGINDTATTLAYANDLFSIEEEDALGAGAILEVGQELMFSTALNTVSNEITVTRGARGTTKAAHGAGDLIKISPSFPRKNVYDAVVDQIENLYPTLFAVETLELTASTGYKLLGTYGSNVDNNNYLVTPVKAISQYTDWQSGSDQTGLTFHSVAVEMIDLPNPFTWTDDTETSR
Ga0257110_11750862	F082541	N/A	MTGSAVTFDFSFDGINFVDVVETDGTPVSYTVTAGDVVRVDPSGWAFAAAGFLRVVSGSSEAADRTINLIFKQS

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